Sequence Similarity and Identity Calculator srs, design phase and source code

Sequence Similarity and Identity Calculator srs, design phase and source code

This tool will calculate similarity and identity of each sequence in an alignment.

For reference, the following links may be visited.

http://imed.med.ucm.es/Tools/sias.html

http://imed.med.ucm.es/Tools/sias_help.html

MatGAT (Matrix Global Alignment Tool) is tool that generates  is tool that generates similarity/identity matrices for DNA or protein sequences

Task: You will develop a tool that may handle very big alignments perhaps of unlimited size.